NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000020

Scaffold Ga0213869_10000020


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000020 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)147930
Total Scaffold Genes196 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)158 (80.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014509Metagenome262Y
F020255Metagenome / Metatranscriptome225Y
F024652Metagenome205Y
F054944Metagenome / Metatranscriptome139Y
F072440Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_10000020114F054944AGGAMEIRPLAAKVTANGNSNKTTVGNAQIVYVCATADDLITNVTTSATMQVHENQAFVLHKAAGDEIHAGTTTTHFTKIAYPRG
Ga0213869_10000020174F020255AGGAGLPSPSEIQSMLPLFFQLLFFAVAGALIVGVFFSIVGWFFRNAIVIMIIVAILFAINYGYIDLTKLFGAVQYDNASITNLLQ
Ga0213869_1000002019F072440GAGGMSKYFTVLTATDTSLDGKSYYSGQDKSEDKSIDIAIQNYTIGKMNTDDQVFAIRTYDDIGSVSLKSIRQ
Ga0213869_1000002065F014509N/AMKKAENTKMGIHIGKHKRSTSWIGRFDPKDPRDMAEFAMVKQIVKACNSPNMKFRVEKKGRKPTNGFTYFGDCVGGIKNATLWDVYVYKRTYDYYNQRRIG
Ga0213869_1000002084F024652N/AMSFNIDDIKDKNEWYERAVNEAKQIHRNPSTARGRTLNEIIEVCLYGHAPEQYLLETGWGDDNRPYKDLLDPTLDPVEIKTTKHAGNIPYVLDRCRIAKLEKWRNYPDIVYIFTNDKKSKEYVHEGIYVWNGNKFKKYKV
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