NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000061

Scaffold Ga0213869_10000061


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000061 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84441
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (51.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031707Metagenome / Metatranscriptome182N
F062699Metagenome / Metatranscriptome130Y
F077253Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000006118F077253AGGAMENQDNMLREIANDNLTPKNTKKKVNTDGLFETTDCSHPDHQCTCGAQQIVLNEY
Ga0213869_1000006138F031707N/AMAFLNWVQESIGCKVEDEKTGMVHTITGGKFLADSPMWPMIQLTDENGVVRYATLDRFEELISVG
Ga0213869_100000616F062699AGGAGMTINVRVVTNKPKIKTTVASGVIMARTLQELLDVDVSGVSDKYVIMYDSSTKKYTAVNPDNILSAASSTELTAPGLPTDFVDTLDVDLDDKIDLDAGTF
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