NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000090

Scaffold Ga0213869_10000090


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000090 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71644
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (38.05%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F015402Metagenome / Metatranscriptome255Y
F016004Metagenome / Metatranscriptome250Y
F023608Metagenome / Metatranscriptome209Y
F041200Metagenome / Metatranscriptome160Y
F053967Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000009031F041200AGGAGLKTNFVHSLLFGLTLILLCSTLQSSNPTQDNTISVGEVTNEIRVGPFAGNPSMAYGVRNILEELLMDLDYDLSENSGRKINIRLVFFDVKNIGKSIGIYHNKVSLTQIIAIGELEINGKVKKRTTQKGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLK
Ga0213869_100000907F053967N/AMIFDPQNQLTDEELNKLGKEDFDSFLEYIDGQAAHLKQFTKPLSSYHTKRFASLEKASQGKTISDDELKKAETIGKKNEQKVFDKIKERFDEMEKDNPKYTDEGIKNIKTNRSQWFD
Ga0213869_1000009070F023608N/AMANLSEEIGRICNILEDSVEEQDWNLVNKMIEDLNDVYERLDKEENGYTQDYE
Ga0213869_1000009080F016004N/AVENLKLKKMNKELVKILETLKEDFEMLQDGTWDLNYSDGSEIQASIDNVDKAIKIVKDE
Ga0213869_1000009081F006200N/AMSKTKQDWLEELVKKYSIPTEEKPDKRGMLNETQLKNLKDGKN
Ga0213869_1000009082F015402N/AMGRTKELLDELHITEEDILTELTARNDDDYQYQKWMESEEFVEYVNAEIDSTKPLYSESDIMGATRYASKSITIPPSEVGKEVYDMLFSEKIEEYLSLK
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