NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10001058

Scaffold Ga0213869_10001058


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10001058 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21163
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (33.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006322Metagenome / Metatranscriptome376Y
F008239Metagenome / Metatranscriptome336Y
F010877Metagenome / Metatranscriptome298Y
F026712Metagenome / Metatranscriptome197Y
F035552Metagenome172N
F050369Metagenome / Metatranscriptome145N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000105815F050369N/AMKITEKDLRNWFPRDMRFLHFCAKYYGYSFHNDEVVERANHLAVLNVMRLVNRDEEFEDEAHMTGMVMSSFRYAILNSYTNSLTANEKNLEVRNESEVTYGDGSEEYSKYQESAVSSDKEIDNLLDVVRDYAETKLPYLERRALLECVIGESTMKELATDTDTTVRQVHLAKQKAIRRVKKLIGVLDENEKKYGEQTDNGKYISPSRSKLQIAIQLEPIRRDEARERDYSKAMSFIHTPPKV
Ga0213869_1000105816F035552N/AMSIKDDLLISADLSNLYWVLGELAEKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLRYDGTVEALNLKTKILSQVMNEKTDEDVNNQF
Ga0213869_1000105817F077286N/AMSKYKYTVEWEGDVANYKQDFETLEEARIAMIMHSKRNAVIHVIKIDEYKR
Ga0213869_1000105821F026712AGAAGMKQTFYPTDSEQQLIMDIVINEFAQRQSPMDNYNIQEVAYRQAISDGAMRTDYYFNK
Ga0213869_1000105828F010877N/AMSTKDLLIALLSGTMPKGDTKSEMFKFYNSMVGKSKYFPRSENPNTACGSCIQRVKTSIWKWYHSDETAPNFSELVFTGRLGAHNIPLYSIEDASKKK
Ga0213869_1000105829F006322N/AMPAKRNKKGDVVSGRGSELTTLQSEFLEGIRNNGMDASNRIAKELNYTNYYRDRRTSGTAFHKELMAIANSEMRSIEAAKGTNLSALIKIRDIALANDDMKAAMEAIKIINDMQGYKAPTKVEQTKIDITATIDLTAPNEEQDYLDIDAD
Ga0213869_100010588F008239AGGMTNREILLEMYEKLWNADKDKWAWNVILKDTLEKIETNNDTNQ
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