NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10003254

Scaffold Ga0213869_10003254


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10003254 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10850
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005315Metagenome405Y
F024584Metagenome205N
F039351Metagenome164N
F050674Metagenome145N
F081783Metagenome114N
F087764Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000325410F039351AGAAGMSRIMVTGDSWSAGEWDPTLTPEETRAFAEKYSISRYLRDLGHEVAHAANPGWGDFVSLNCLMTHEMGFDFVIYVKTCATRDFKHLTPEHGLVYTTTDLFEKIKLVKELEYNILARYKHKLILLGGIEKIEPNFSCNFVLPSITEFFYPDFKDTTIFGDYTHFEKYSDGDKKGAMKLWELWEHKHNFWKEHPEHFASATDQVHPNRKATKALAEFIHNHIS
Ga0213869_1000325413F024584GAGGMYFKLVSKNGYRDLVRNARRICVSQLSEEEKSAAFVELYGILKEKLFESTRSLNVEAAYADRCIHWNQNDLSQIKPVNNMRNPWLRFKREFEQCLDGKMPSKNVEIALAWFYAAPYRDDWIAS
Ga0213869_1000325414F050674AGAAGGMDRIVNPLNAVGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHEEYDSAVRRINTYWHMLPRFRHHNPDEFWKRDKVSYPPTYLELMVDDSDW
Ga0213869_1000325415F087764AGGAMKRPTISEAKTFFYQNAPFVMDEYQDMKQDYGEFFAARYIIEILIDYRNNEKEASNG
Ga0213869_100032543F081783AGGAGMLKWFRDKYDDWKFEKEFQAKKKEIMKVDPFIYNIPDTNEINIGDIVKNDDSKD
Ga0213869_100032549F005315N/AMFIVTCGDSFTQGEGLEKQTQAYPYLLNAEITNLAQSGASEYLITTQIEQAVKLKPNLIIVGHTSEYRWEVWDARNECQQGFIIANHILKNEKYYRNWILSEQILSNTRNTKEHKAAWHAAGMLYFSDIELVQRLWSGAVAKQILLANRAGIPIIHHCCFPHLQPLLAELTDDYIEFHLDLEKHKDLAPDGSHAGASSHKKLANMIMNKLS
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