NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10003420

Scaffold Ga0213869_10003420


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10003420 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10542
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (7.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029763Metagenome / Metatranscriptome187Y
F032856Metagenome / Metatranscriptome179N
F034391Metagenome / Metatranscriptome175N
F070144Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000342010F029763N/AMRKLIIIFLIATSFCYTQSNSIPPELYGNWYNLDKELLTIQPNNTFVRKNTERILAVGTLKMIDNELRVIRADVDDEYNLLFYIGNTSLVVTKPRSQEAWLFYRLGN
Ga0213869_1000342021F070144N/AMEEVNPEMEGENWSVKKHTVHKDKYVARHINIWGSEAHTVDSLIEAMEIIDKFKNQEDWILQKREEFGDYMWNNEDFRKDITKGT
Ga0213869_1000342022F032856N/AMDEAKYRYWSSVYTDYLIGDISDELVNEYEGNKNVSDEFVVDEDYVMQLIEYWIDNYTMGNFKCKEIIDNLSYDIFEEDDEYGVRPDGWKQAGVWALDHAIHNDDNIQAIYKMTNEKLQELWKK
Ga0213869_1000342023F034391N/AMTKYAQQYDNKLLEGILDHMANELKSEFGFSTLDEEDTLDVISLFVDNPDKYETAYLHSIETTDTEVVPSKEKSNVEILQDLSNYTRYDG
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