NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10005390

Scaffold Ga0213869_10005390


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10005390 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8127
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017499Metagenome / Metatranscriptome240Y
F035780Metagenome / Metatranscriptome171Y
F064641Metagenome / Metatranscriptome128Y
F087903Metagenome / Metatranscriptome110Y
F091005Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000539022F064641N/AMDSQEDKDANAIRHYKGTIKQFKDMFDDLAGGKDTNAYDSPVRQGFDVHPTRDGDVISPHWEEGHEDEKTQNENHVPDFKNFSNK
Ga0213869_1000539024F091005N/AMASIDLIPGFESFNENDNNTINNLNSMASTDLERIGDYADMIKDRMSQGQQLDAWMYSKISDSVKNLNSVHDTMDGKDGIDEAEKHEFNPNETAERLKRREQQNIERFRAAQDREDPFAVQYYQLRISLDKMDLQRLKIQTQIHQLKQKYKK
Ga0213869_100053904F087903N/AMINSGREWDFIEENIQIEEILTEANAYNLKQEVMTTAAIFMKDDPELDKVSAYNMAYMEWVK
Ga0213869_100053906F017499N/AMSRYNSRMHGIAEDNLYVDLNWGFDHILGYWYDIIETRNGNETVVEEWSSTMGGSRSKMLEFLIKYNLPEEHRSMVGLDMQF
Ga0213869_100053909F035780N/AMAEIKVLESKEVWSAVTNEHELDIDGEIISVRIAENPKNTEFFEWNEISGWEEADIDDGLMKHVYEAWSNGELG

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