NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10007622

Scaffold Ga0213869_10007622


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10007622 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6701
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (23.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029108Metagenome / Metatranscriptome189Y
F066686Metagenome / Metatranscriptome126Y
F072343Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000762213F029108N/AMNQINPNKYLIGKKKMGKGKVGAKGGVGIKTGAFGGTSKFNKKRLDKKS
Ga0213869_1000762216F072343N/AMHIRREIDHILDDIIELIAQKKSSSKEEREGEEVLFNHLCETINLKTNNGKRAKGMWTDSPEFLHNK
Ga0213869_100076222F066686N/AMEELQNTINDLQARLAIVGGGRIIITSDHVSISLGAEHENFEVQENEVDVEMHKQMHNY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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