Basic Information | |
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Taxon OID | 3300021375 Open in IMG/M |
Scaffold ID | Ga0213869_10008779 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6164 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (81.82%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001521 | Metagenome / Metatranscriptome | 679 | Y |
F003976 | Metagenome / Metatranscriptome | 459 | Y |
F008134 | Metagenome / Metatranscriptome | 338 | Y |
F020816 | Metagenome / Metatranscriptome | 222 | N |
F038195 | Metagenome | 166 | Y |
F059441 | Metagenome | 134 | N |
F083384 | Metagenome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0213869_100087791 | F020816 | AGGAGG | MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITKVKTWEEDDEV |
Ga0213869_1000877910 | F083384 | AGGAGG | METNKLTNFVIFKDNKRLEMIKDIYINGNAFSKMNVEQREKEKNKHKIHKDNYVSVNVLSENMFIREGK |
Ga0213869_1000877916 | F001521 | GAGG | MKLWITEHVNEDGAAIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHDDHTRKRTVH |
Ga0213869_1000877918 | F008134 | AGG | MAQLGSNEKPVLMSSKKNKGRLYKPSDGGKGSAPRVNIHSKQYRDNWDLIFGGNNAKKENEK |
Ga0213869_100087792 | F003976 | GGAGG | MSRTYNDYYFEKEDVLDTLDKLEMSVRFLNVWVNKPMGLENARYVLEKNANQEFNWFSRDMVKELVEEETYESI |
Ga0213869_100087793 | F059441 | GGAGG | MKTWSSTIKYTVFDMGRECETEEEYREWVKETFILDHNIYLRDDEITNIEREELYNE |
Ga0213869_100087795 | F038195 | AGGAGG | MKLHKDYYEYKTIPFTYFKKVANRHDFKKQWVTVRCQEDIMKQQPHNVEIRRLKKNV |
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