NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10036104

Scaffold Ga0213869_10036104


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10036104 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2658
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030251Metagenome186N
F046022Metagenome152N
F087025Metagenome110N
F105929Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100361041F087025AGGAMKTLNVHFINTGWGNDHGVREAELLEITVNEAGTPIAKIRNPFNYYTAELTARFLNTEWVCDLD
Ga0213869_100361043F030251GGGGGMLSTDSFPPVKEVTFPALQREISLVKRTPFIGTPLWIIFERDGEPEPQEIARFRDFYLALECFDSLVEEAKNES
Ga0213869_100361044F046022GAGGMKVNRQILTARALQDIQTKTAAQRAVDPVEKSTKIRSWKEIFDAQLKGESDA
Ga0213869_100361045F105929AGGAMTTFTGYIARETEKAYGILINLTDEKLAWIPKKKIENETRSELAAVVVMAGETIQRKVWLTDLEIDTEWFNKVLA
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