NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10083238

Scaffold Ga0213869_10083238


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10083238 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1588
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030452Metagenome / Metatranscriptome185Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100832382F030452AGGAGMAGVINVTSGNQAILTLGNTDVLARPGATGGLALPLVQDLTLNTTPGTVRYSTLDSTSSSAFTTVVENSVSLNMLLDDDAFFGLSNATNEVANVGLLSSSTSKTEVFFSVAFEGKDSADYYIEGKGFIGGLAPSASIDQAVWISPMEIIVNGDITKGTV
Ga0213869_100832383F052627AGGMSIRDNLITQITTNIATHSNFSISQELPFDQSGIPLYNKNMSTIYVDEQEIEVEQLYRTLDQGNVNQTTTTVNAYLSVDAKNEYSDINTVVANLLIARNAVTNVTDSSSDYETDITDDVITYTFEYNFTTI
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