NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10138246

Scaffold Ga0213869_10138246


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10138246 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1149
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044500Metagenome154N
F053265Metagenome / Metatranscriptome141Y
F100722Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_101382461F053265N/ANTIHPTWSQYGEKYAPQYGAPVSVTVGTKSFVVYELTASWKDSEVSALVSLGSGKAEPNYTVMTAEEARAFIAANQEAEL
Ga0213869_101382462F044500AGGCGGMEQLKVKAQEIKARLKARFNALRDIWQYSDSQPTEITLAVALIFLYPTATYLELGYSPIMDVLGPMAGIYQLYCVSGKCLSCRVRASFITFSFYLLATVMYLYCGMLFSSPTYLGWLVLCFSSFGSLKRIKKEELHRKNG
Ga0213869_101382463F100722GAGMDNSTQIVLAVVTLLGSAGIWKYAEARLRVKADLKKEEQSTSDTVLYRDDLKSRVEEMDKALKEANKELLALTQKVAKLETENTFLRREIDILKSK
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