NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10181735

Scaffold Ga0213869_10181735


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10181735 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)959
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054415Metagenome / Metatranscriptome140N
F057353Metagenome136N
F093726Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_101817351F093726GGAGMSYEIAEYKYIGHMRSVYGLKGDLEYPSRKHSQQDSEGNWLLISFNGHKMGKVMKDGKVI
Ga0213869_101817352F054415AGGAGMTQHSDKVEQQRELLKTEALDNQIKAIDIRPGRIQTWYRSGRVVTEYPRDKRKNTITDYRGLDNYSHLIK
Ga0213869_101817353F057353AGGAGMSVTQYNFRKPKINRQEHEAINKILTHPHFNALINPKALNVLTDLGISAKQFQDIINKNKSILKSYKTKEIK
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