Scaffold Ga0213874_10184909

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0213874_10184909

Scaffold Ga0213874_10184909

Overview

Basic Information
Taxon OID	3300021377 Open in IMG/M
Scaffold ID	Ga0213874_10184909 Open in IMG/M
Source Dataset Name	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	743
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.2822	Long. (^o)	-43.5936	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079163	Metagenome / Metatranscriptome	116	Y
F099814	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213874_101849091	F099814	GGAGG	MEGLAAQALNEFETGRISRRKLIETLTLAATTFAAAGVAKAQSPDPTLKAQLINHFSYSCPDYRLAAEWYAKLLSLEPSGGNDREAVLPLGRRGEKPYGVTANDVPLTHLIIRTRDPNGPPPRSGSR
Ga0213874_101849092	F079163	N/A	YTKPRDFFSSVFGLETAKDLGERANLMFGPEPGNGGTFLIARNPLNNRRPQPQAYIDHFCFTLSNWNEARVRAAIRAKGLAISGGRDGSLHVLAPYNYDVQFANAVEENPFRPRT

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.