NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10004314

Scaffold Ga0213861_10004314


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10004314 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11623
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002542Metagenome / Metatranscriptome550Y
F030747Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0213861_100043142F002542AGGAMHPRHLGLQIDWPLFIKMPLTADNKNWKKGEYFNWLERGIEEVTVATLYASGYVYHNKDLEVQNKVGDRLSEMDIKQLDTLVNLLNVEVKDRTSSTSEFESKKCKKSKIADKQRGLIRRFLNGNRWITEDFYTIRDKVLGE
Ga0213861_100043148F030747AGGAMDLINLKPTSEIVEVTLLHPNTGEPLKNDDDTDMTITVYASHSKEHKAAMHEQTNKRLKAMQSGKKQEITAQDMEEAGLTLLSKITADWNITYGGAKPKLTVAKAKEIYEEVFWIKDQIEEALANSLDFTKA
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