NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10006398

Scaffold Ga0213861_10006398


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10006398 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9312
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023607Metagenome / Metatranscriptome209Y
F028771Metagenome / Metatranscriptome190N
F037677Metagenome / Metatranscriptome167N
F062669Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0213861_100063982F062669N/AMQKMIITMAKKKKTSFNYYKTNNDAQSHCFKKGYVIYPEAFEGGWRVSIELGHKKHTYPDILSLTEAYVKIWKEYEKIQNRDNNGKN
Ga0213861_1000639821F037677N/AMQDIKLGALNFITFMVSFSDIEQWLKLTLLLASIVYTVMKIYNLGKKNDDKIL
Ga0213861_1000639822F023607N/AMHIYKLVFDTEQQGKQVLIDNNVWEEITIEGVTSMQYINGTKGVVNIGKVIDPAKTTDPEHPVYYDGWAYDVISTDELDFGSNEVYPADNAAHQFYGYPRNAEVPKN
Ga0213861_100063985F028771N/AMSFLKGNIGESLWLNELSKTHTEIEKAPNKRFYDWDIKAKYKGNEVTYEVKYDAKGYYYADRYSRPVNLYIEFLNTKKGEDSGIIASKATYYVYILKSLEGVETAYVFKRLDLLNHLRNSDIKVKGNSFGGDNNAKGWTPPLNSLEHLIVKKIKFI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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