NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10036371

Scaffold Ga0213861_10036371


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10036371 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3278
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036469Metagenome170Y
F054417Metagenome140Y
F059345Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0213861_100363713F054417GAGGMSRFNKQKTIDKILDDFAECRLSSYWFPKSGTQIEWSSHQEIYLILHQDKTWDYAEPKHLDMYVEDLEVQDLKEYARG
Ga0213861_100363714F059345AGGGGGMNIEHTKLESIHSALQELQQEFNIPDDHEHLENAFKFTEDLREKYLKESA
Ga0213861_100363716F036469AGGAGGMSTYYRPTEPIPLQKIKDSKFLQDHEFDVVEDEYGTYFTCGGHCIHYATDTDNNVIDLFRYGSNNSEKIITPLRYEFEVDFVSEHDEEYDDYASDDTGVMRISIGDLADDS
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