NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10039190

Scaffold Ga0213861_10039190


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10039190 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3132
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010900Metagenome297Y
F088882Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0213861_100391904F010900AGGAMTTENFIERAQDMIDQRFEYETTHQDAGDNYSHLASEGDFDYHNGESRLQEYCQEMGIDLSGVEIDLLARDVIFWGYMVQGRGFDPQKRFIVASYIVGEIEEQIESTTIGARFTPYLIEQLNRCTDAFWTYSSPDMAYFYINASDNHWDHVCDADTIRDLVEQHKDN
Ga0213861_100391905F088882AGGAMEIKPMQHLNLTYSGQGKYTVTWAGWPSENFKTVRRTMQTEYADVRDVAPIAAQLFARWLETGPMGEDCKAVVELVTHAHINGDKSAVGVSINWERK
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