NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10077911

Scaffold Ga0213861_10077911


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10077911 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2037
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010198Metagenome / Metatranscriptome307Y
F028000Metagenome / Metatranscriptome193Y
F029431Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0213861_100779111F028000N/AAYPTGLAKQTNALERGQTIEVIEMTTIKTKYGYSVDCYGICNEYATIDMCFDDEDFDGSTSSSFTNWRSAVLELSEYAHDNGIELVQLESDE
Ga0213861_100779114F010198GGCGGMTIQLANKDGYRFGEQAYLVGNEFGVLCISYGNNEQEALDNTVDAGFLDCQLMSEDDHLEYEANGWHDSYIYAGNASEPFWSEYLWIKPASERKREAA
Ga0213861_100779116F029431GAGGMNSAKRKQLRREARINLAVEVFGWSVVILGAAVTAKFMYVALVYIMLF
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