NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10135637

Scaffold Ga0213861_10135637


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10135637 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1416
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004956Metagenome / Metatranscriptome417Y
F043415Metagenome / Metatranscriptome156Y
F088799Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0213861_101356372F004956AGGAGMKLISPNGKSSVIAHPTQVESMKEKGWKEEAVHSQDKIKPSSKKKSKDEVENGNT
Ga0213861_101356374F088799AGGAGMSQYMLETEEDMIAYFDVNFGHAINATYIKNGISSAIKIILNREYIQQDDGIGVEATKPIAYCRSIDVPNVAYGDLLNADATTDVEGNILKAAQNYTIINVQKDKTGFTVLMLEEA
Ga0213861_101356375F043415N/AAAPVDGYQPRAIIKATDAPYINHGDKIQVNAITTNNGNILVPQTLFAIKTVEPDNTGLIEVVLEEQ
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