NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213864_10000136

Scaffold Ga0213864_10000136


Overview

Basic Information
Taxon OID3300021379 Open in IMG/M
Scaffold IDGa0213864_10000136 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30996
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (78.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F016657Metagenome / Metatranscriptome245Y
F058817Metagenome / Metatranscriptome134N
F091647Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0213864_100001361F091647N/AMKIIKRAIKLSYDRFKPNPYQRRYHFAIAFNVNKPICIAQNNPIKINHKAYKIGQKFNISKYQEYPYSHAESHLISKLLDTYNTIRSDWSLVVLRINRQGKILLSKPCDNCQSILDAVGLSRVYWSIDKNTFGYGSKELIQV
Ga0213864_1000013633F016657GGAMYRNIDEDIRLLTMARRYWTEEQLSKEQVHWVLKGEGYSEREIDNAISDYYSIHIRSNIMLHHFIAPVVLVIVMIVLVLKVYSLLK
Ga0213864_1000013675F000325GGAGMKTANGNDKLGKENCIVVSRPVGDTCPSSCAFLGNGCYAEQTEKIYPGVRPAGMQNVITERGRIRSMIIDAERKGKSIRWHERGDWFLNGKLDTDYVDNVVWACESILADGGSLPDMWFYTHIYDSRLVSMNKYMAVYASVHNAQDVLDAKAVGFKLFAWCDSDEKIATKRPRGKVKAQQWRDSLPKLVVIDNEKYVTCPEIRRGRGVVTCTPTKNSVACNLCVKGLANVLFPSH
Ga0213864_1000013683F058817GGAGGMDDINTTLLIAALEAEGIVEPCDDIDCHPLDWMEVVGVDLFDECWNPEEAY
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