NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213864_10018708

Scaffold Ga0213864_10018708


Overview

Basic Information
Taxon OID3300021379 Open in IMG/M
Scaffold IDGa0213864_10018708 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3143
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012206Metagenome / Metatranscriptome282Y
F032262Metagenome / Metatranscriptome180Y
F034158Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0213864_100187083F012206N/AMSQDTFAFLQQSNSAASDYVRFQDGDKKSLRIISQPIMGHELFVDGKPIRWEADAPQPEHAISDERPKKFVAFVVYEYAGQSDSGAVKVWSFSQRTIIDQMAMLFKEEHWTAFELVISRKGKGLDTKYNVTGIKSPIEDTLLEFAAETKKYIKLDNLFTGENPFIADLPTVEAKQAKQEPNDLPF
Ga0213864_100187084F032262N/AMNDGYDLLALNLAWFGWEVARWQEVIDWSISAAGALTLVALNIIRLRKALHQHRNVDSDK
Ga0213864_100187085F034158AGGMPERIGRAIGKASQAVEAVAESSGNRLRWSTKNTMGGLIVSTACEQIVIHGITWESIALCFVGILPLALSTLES
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