Scaffold Ga0213864_10071904

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213864_10071904

Scaffold Ga0213864_10071904

Overview

Basic Information
Taxon OID	3300021379 Open in IMG/M
Scaffold ID	Ga0213864_10071904 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1684
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020186	Metagenome / Metatranscriptome	225	N
F078048	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213864_100719044	F020186	GAGG	MAILSNINPNRPQRGKRSVRLSGEASPQEIPLYAGTVVLIANGAGTTFTLANGQEGQMMTFVASSNGAGNINDIRVNCRARYAFDSGGTRITGTSSTAEWAPFNATQEHSMAWAVFTDGEWCWSQGTNEE
Ga0213864_100719045	F078048	AGGA	MADLQNLRGQRNLFGNSRSPFNGWVYESNYKMFVCDPDSVPDSRAKFDSVGHRMMNAINPNWVVFRSHTGQIMML

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