NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213864_10088817

Scaffold Ga0213864_10088817


Overview

Basic Information
Taxon OID3300021379 Open in IMG/M
Scaffold IDGa0213864_10088817 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1522
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025491Metagenome201N
F028499Metagenome191N

Sequences

Protein IDFamilyRBSSequence
Ga0213864_100888171F028499N/AMQAGHCCQCKGGERAITLKGLQSSDGVTQWEWGPGWKSARVYGSTDFVALTHDNTTGNNIAATVSGNQFRADYNTGSDSYVNNSRRGVTIADIDGTAGTDTTTAVDWILDIYSPDYPQSVNLFGGG
Ga0213864_100888172F025491GAGMSGFLINAELLALIRRTIRQVLGEYRNAEGHRGRYQQSQRRLQGVLDFDLDSADAWEDAPSTATFSVYAKDSSGDMADTGRNVLVTNRALFLAYTAGTYCKIEWIDGEWQIYAADCTG
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