Scaffold Ga0213876_10001350

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213876_10001350

Scaffold Ga0213876_10001350

Overview

Basic Information
Taxon OID	3300021384 Open in IMG/M
Scaffold ID	Ga0213876_10001350 Open in IMG/M
Source Dataset Name	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15352
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.2822	Long. (^o)	-43.5936	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003434	Metagenome / Metatranscriptome	487	Y
F053597	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213876_1000135010	F003434	GGA	MDNQTPEDPYQILARERSHEDSRQTVATNRMLFQSLVLINGGAAIAALAYYGAHNLSGAGKSAALLTIILYCLGVFTAVFAGLYVRRTTQEWESFWELKSYPDSAEQERIIKGHREHAVRSKRKSAALLISSEVLFLVASLCLVVSLG
Ga0213876_100013504	F053597	GAG	MRADKPHELQPRKIRASNVSNVVRHFLLCALAVATGFGIFSPPRTLATAKSTEAERPNFTGAWVLDLQSSTSLDALMTQIGAGFIDRKYAAHVKLKATLQQTGDILTIAARGPGFALDQTLYLDGRNDPSPFQILGATSVNTKTVWSKHDKKIVEMHRIRTKQGKEGELTIKRSLADEGKSVVVVYTLKLDEEPAPTSARQIWRKV

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