Basic Information | |
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Taxon OID | 3300021384 Open in IMG/M |
Scaffold ID | Ga0213876_10027981 Open in IMG/M |
Source Dataset Name | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2973 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil |
Source Dataset Sampling Location | ||||||||
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Location Name | Brazil: Minas Gerais | |||||||
Coordinates | Lat. (o) | -19.2822 | Long. (o) | -43.5936 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F030682 | Metagenome / Metatranscriptome | 184 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213876_100279813 | F030682 | AGG | MVRLVAALVALLAALIVPGIGAGAEDLPAYDSRVSVALDQLDAVPATSDLRGVLATNQVEVRFVPMGAGIYARYSVLKHTIEIDERWSDADETTLAAVIAHEATHASDAVSGYLATGGEPACIDSEVRAFRTSALFWLAQYGAAGKVDASSELDQQLNSIADRELHDPQGLEALVRQTYSQQCSH |
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