Scaffold Ga0213876_10089039

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213876_10089039

Scaffold Ga0213876_10089039

Overview

Basic Information
Taxon OID	3300021384 Open in IMG/M
Scaffold ID	Ga0213876_10089039 Open in IMG/M
Source Dataset Name	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1635
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.2822	Long. (^o)	-43.5936	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F013826	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213876_100890391	F013826	GAGG	MAICWRCPLCGEVSCEYDVNSAGKPLACDNCERALLPQETLCTLCDTPNPWARRDSVHYWCRECGQSQTFYAHAV
Ga0213876_100890392	F002324	GGAGG	MGEIKLFQICYEGDLTVEVSNAMRRLGAEPNFDQSWEVWLPEGRHSAPLVRYLRSHLGEDSRLVVASTHFTTARDFLMIRHSQTPDADYSELHSAIHRLGVVVDLPFESTFVVQSEDRTDVNTLGAALGELCPDDSLMVIGINHDWAYCDAGVSRMHVMGATLADGPQFRTF

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