NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213868_10236640

Scaffold Ga0213868_10236640


Overview

Basic Information
Taxon OID3300021389 Open in IMG/M
Scaffold IDGa0213868_10236640 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1075
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085398Metagenome111N
F088541Metagenome109N
F100724Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0213868_102366402F100724AGGAGGMTRVQLHQWLAWRRELGLPPVPQKTVNDLLNDRRTFVIDQPRTVQAFRKVTYLWGLIKVYKPIKLDK
Ga0213868_102366403F085398N/AMKPKDWGTTDIRLTKALSLNVEWTYYAEDVSADRDVPSEPAIYEIETVWLFEEITESIIDVTDLEGKLWQHDEVLQIVEGGKR
Ga0213868_102366404F088541N/AMSYMTYPQAQRFVPSPRDIIDHLCDQGMDAFYTAEELTSAADEIRHIAVMQVCTGISHSELACILDIATDYYFHAQAKTRWAAALDKLTAKFNALISAANYAS
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