NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210393_10000095

Scaffold Ga0210393_10000095


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10000095 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)99570
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)75 (75.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000664Metagenome / Metatranscriptome950Y
F007270Metagenome / Metatranscriptome354Y
F062249Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_1000009514F007270AGGAGGMRLARPVYESLPVIYMLIGGLAILLFYINPLGFAGKAAFLIGVLAETAALTLFLRRRDFRELSREYNGETIELPSSLKG
Ga0210393_1000009515F000664GGAGMADNSMTGTFQIPKDLLSEAKRTSKPKSEQLHVEGWRNSWLSRIAELLVGKD
Ga0210393_1000009549F062249GGAGMLSLFMERLLAVGALILLLTGLAGCSAEQNELGRHVSPNQKLVAVLMESMTGGAAGSVYEDIYVSDQGIPLNLHDPIFGAVGCDRLTFDWTNDYTLEIHYESTCVIRQFTNRWFRPSDLAAGRPNPIEIILNRQ
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