NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210393_10057844

Scaffold Ga0210393_10057844


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10057844 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3051
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024605Metagenome / Metatranscriptome205Y
F104919Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_100578441F104919GAGMTEVRSVKTTFIFMAGIAVGLCASLVAAQGAGSIAVLNTSGAYIELVTLVPGQGSGQHAGIPGE
Ga0210393_100578444F024605N/ALRFCRRQARPIAKTETLGFARLMEFRRHVGMPVQFPASLPINQHSYRMRRLMPLSYRTPKIALVAFIALACAQSNVAGATDVPAGPGSLPQTLTQFEYFIQSRCIPCVREFYTIATLPFPSVPTPTFAGLAPANPAPNTRAGEMRLELLRAYPVGQQSRQHMAMRVVLSVSAGGPGTTLYPLGAGLLDEDEVPVLAAALSQMSKPVSATGGDSSIQLVDTEFHADSVRMGTVRTGNDILAYVQIAPADPLFALKQVWELPAMYLPSKDIPTLEHAVVQVNAKIQTFRGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.