NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210397_10000025

Scaffold Ga0210397_10000025


Overview

Basic Information
Taxon OID3300021403 Open in IMG/M
Scaffold IDGa0210397_10000025 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)185408
Total Scaffold Genes188 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)153 (81.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010955Metagenome / Metatranscriptome297Y
F060393Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210397_10000025106F010955AGGLLVEFLCDMRQIWRMAQKNYGDEWGTGSREGYEDRGTFRQPRPRQKEPGSPLLRIMGAIAIVGGTCWGVYLVTSTGNSIAALQENHGPVAIVGLGLVSSIVGKYLRA
Ga0210397_10000025148F060393AGGMKHKQGNIARWIPPWLVIACLVLVLGSAAAQALHFHPDGLEKDARHCSVCPLLHSAVRVANACHISVTFQQTGLMGLLLETDGKAEQHSSPYSSRPPPAV
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Institute for Fundamental Biomedical Research
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