NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210397_10008419

Scaffold Ga0210397_10008419


Overview

Basic Information
Taxon OID3300021403 Open in IMG/M
Scaffold IDGa0210397_10008419 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6237
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005983Metagenome / Metatranscriptome384Y
F006433Metagenome / Metatranscriptome373Y
F007657Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0210397_100084191F007657N/AHHLHDRSRHTVSWVTFEAAGGGLVVVNACHVVAIYDEQGAVKLATTAGGVHVLKDMTVQRAAAAVSKAADAVAVGTG
Ga0210397_100084192F005983GGAGMQTESMYDGQITYDYNEFCKDYGHPTGRMFTFEVTHNAVTYVYADVIGTVRDGEVVFCLNGSDLADTRKAH
Ga0210397_100084195F006433N/AMTDANYRIVQREDGGFAVEVVRLGALPQTAAGFTTEAEASGWIAQDKRLWDAGDPFRTPAGRKWRGS
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