NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210387_10039582

Scaffold Ga0210387_10039582


Overview

Basic Information
Taxon OID3300021405 Open in IMG/M
Scaffold IDGa0210387_10039582 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3755
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048424Metagenome / Metatranscriptome148Y
F082044Metagenome / Metatranscriptome113Y
F102028Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210387_100395821F048424N/ADRVLVKILPYVHPTLATPGIEINKGVVIAVGYGRRQRRKVGFKQEISDGPPVLGPGGKVMQFAKSKLSGKTLYFEDGPETGAIIPMQVKPGDVVEFSFRNITIVDFDRLGFPGIGDLAFVWQKAIYSVDPDESLNDCLLWQQSAGYDRKGNFMSGSEDWHRA
Ga0210387_100395822F102028AGGAMIGSARNPGDPKTAWGKWPKIRPETVAPLRDGQPDLYNYVPTRFVSKDEAKARGWRLFWSGDVCVTGHRAARYISNPSVCTDCQRLERGKVPVYGKGVPELEKARVRAYTQKNTAAIARPAQPNAAEKKFLEKYAELKDFTLAAESLGRTDSEFLAILSWNELFRDSVNRLEESMGIARTQQVTDDFDWTEDKQRVFLITYANTADVKQALRFVGATNVQFHKELTSNSDFQRGFDDAHQIARAVFDHAASAAATKGDSRMLGRIAANLFPEKFGENLKMDLNVKQNLTLDQAHAQLATILSRFNRQGLLSAAETDDEPAVEAEYRVVESGGDDEVAPDPEPAGADTGSDPNSDLVSGSD
Ga0210387_100395826F082044GAGMSVTLKLVHEEGIRLRQQAAHKIEQKDLTGAVSQTVDWRFVKRPDSGGKVVEECQQDEDPRRVDSNGRKMQLGTYTVHVTAGMNNLVIERKGKVTPFNFKNGSIRNQVRVQYQKLVDSGRQTKDKKPVHEWKNDGAAQYLPPNTFGGAFVGDGQRAIVDEMPT
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