NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210387_10446583

Scaffold Ga0210387_10446583


Overview

Basic Information
Taxon OID3300021405 Open in IMG/M
Scaffold IDGa0210387_10446583 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1148
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068066Metagenome / Metatranscriptome125Y
F087818Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210387_104465832F068066N/AMKKIIFALSSALLLIGCTTEESRQANQPAQTPRFGEPVSAIPWNQPTDWEKGGQLGSMPGVGLSH
Ga0210387_104465833F087818N/ARAEQDRQALGRRLIAVEDELNQFRFAANKTKIRPAIPLEGSILSINQEAKALTVSLGTDAGVAANSRLTVMRNGEKLTQLRVVSAELNSCVAEFASAAPDNLSKVAVGDSVLLATK

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