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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021407 Open in IMG/M |
| Scaffold ID | Ga0210383_10000009 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 281449 |
| Total Scaffold Genes | 258 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 213 (82.56%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000169 | Metagenome / Metatranscriptome | 1788 | Y |
| F000678 | Metagenome / Metatranscriptome | 940 | Y |
| F013955 | Metagenome / Metatranscriptome | 267 | Y |
| F016891 | Metagenome / Metatranscriptome | 244 | Y |
| F018213 | Metagenome / Metatranscriptome | 236 | Y |
| F026069 | Metagenome / Metatranscriptome | 199 | Y |
| F032360 | Metagenome / Metatranscriptome | 180 | Y |
| F038866 | Metagenome / Metatranscriptome | 165 | Y |
| F085956 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210383_10000009117 | F085956 | N/A | MAFDIVRWDDMAIRRASRDPNALVYGAALSALSAAIIFLVTALPGMLTREGESPEAIFMGLLLGLVFFWTYMGIIALIQIGLCHAIAKIFLGATGTLVGVMRPLFLGWFVNVLILIPVVGVFAVGIAWTAVLMLVFEEIDGIGRMQAFLISAGINAVFVAMQILIPH |
| Ga0210383_10000009119 | F038866 | GGGGG | MTWKDEFLMLWIFCSVVIALAARHFLGGAVYLVKQMAVFSLAYLPGLLHLLTGHLH |
| Ga0210383_10000009129 | F018213 | GGAGG | MIATLHFATLVFTTLFAAAAAVGFNWMLLRAMFVLMRPATARRVNSPTHLVRGTTQLTRAYASHR |
| Ga0210383_10000009131 | F000169 | AGGAGG | MAKKSKLNQVAASIGGAFGKADRKAHQVVRAGTLAKKELHDISKQVDALKRQLAKTTKRLKNALS |
| Ga0210383_10000009151 | F032360 | GAGG | MGKEDAMGETRRRFLMTLAAAASCSVVTDESMFPQVRKNNPFPTPPESAETQNPAEAAAAKSNPPNAKRAALQQNEKEFRAEVDRLCQLAGELKQEVDKTVTTEVFSVQMYKRTEEIEKVAKMLKSKAKG |
| Ga0210383_10000009161 | F013955 | GGA | MGAYLRRNCCLALAGFFLCFGAAAQSQNPQSQNAPPKDTKSQKKSKHAKPVETSIQNYYGGVFLVGDGGIPNGPCFRINGRVTSSGFFNDLKSYDNDEGTIFRLGAAEVTQFPDKLLLSLRIRDQPCGFGLQPVGTGVYLTQETMHSMKLTLYWKHGVDLRPAEKVAIVNVSVDPIEPYATNLAAELPKRYLWSYEFGIPAEGVPLTDSLVLVFRTADGHIVARVAARL |
| Ga0210383_10000009177 | F016891 | N/A | MLRAVLSVNECERVVSKHPATFFGENFPSLAEGSGGAGDFAVLKFAAEESVGNWRPGFYRLDSNLVELNDALRDLQR |
| Ga0210383_1000000963 | F026069 | AGG | MWIQLLGPFLALLPSRWRKALPFYQAVRWRSAAILSGLAESVIALTGLMYWYSYSVTTWVSRALDNTLSKSAPTTITDHEIGFAALLIWATHPLTWTIVYFGIEGMARACAAFTDTVLGVFPLYLLERIYSKIFRRGEPEPAGAVKFSQSHISSYVDTMKEKVVTARLSPVPDELCFARNGAEEILEIRAWCAKPDWTPPRVVRYEDRYYRLEECSRGSGARPFVYKLRRLAAGVPGRTVLIYSPDEAPILASR |
| Ga0210383_1000000981 | F000678 | GAG | MDKFEEFGRRIDGEVSRLKKINNFEDFGKRVDEELARVKSFVKEEVAPETEKRTAQFLREVSEKLSEAAGWIESRNSARTEKDSQKPPSQS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |