NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000060

Scaffold Ga0210383_10000060


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000060 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)123251
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007329Metagenome / Metatranscriptome353Y
F015893Metagenome / Metatranscriptome251Y
F076300Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_1000006011F007329AGGAGGMKKLHVAVIALSVATLGIPALAFGTPQAMSQDENKPELVNIKGTVKADGDKIVFVSDESGKSWDVVNPETLKEHVGHHVELSAHVYKEKGQIHVMTVTMLKQ
Ga0210383_100000604F076300N/AVPVTVAVKESVLAVGTAAVVGLILSKTEAAAIRVTLAEADLVGSATLVTITLTVAGEGTLAGEV
Ga0210383_1000006047F015893GGAGMSTQENEAPLKQPWRLSLDSWAVVVALLAALLVRAGVFKHIPW
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