NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000061

Scaffold Ga0210383_10000061


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000061 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)122715
Total Scaffold Genes116 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)100 (86.21%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000807Metagenome / Metatranscriptome883Y
F011960Metagenome / Metatranscriptome285Y
F026083Metagenome / Metatranscriptome199Y
F043500Metagenome / Metatranscriptome156Y
F044033Metagenome / Metatranscriptome155Y
F060175Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_10000061113F011960AGGAMVLLAKIALGFGATVVMAGAYTFHEGLLRVDVDETHGKGSHVHVWVPAAIVPMAMHFIPRDRMHDAGERAANFMPLVHAVAKELQKYPEAELVEVHDGMQHVHIRTHNGNLLIDADEPGQTVHVSCPLTTIDDVSRELATFAPGS
Ga0210383_1000006117F060175AGGAGGMRISRLQIVGGVALLFVVLAVGLRAQDQKSPSLEEQRKAINLVRAINTAEVRYSSGVSHGRFASWTELYDSGLLKGLELSAGPEVIPGYRLDLLASADGKSFMVGLHDTKDGDGLFSVFSDQTGIIFLGAAAR
Ga0210383_1000006122F043500AGGAMKNLKALLPKTVWIGTLGVAAMLLGWTPSCKAQEVSPAIFTDTGVEDAYPVTKPLAKKPVKVQVAAHVNQSVTNYDANYRKQNAQRVARKVNVVSAPGA
Ga0210383_100000614F000807GAGGMKLPMKQMRPNGVDLVCWSGVVMPCKSCGSLNQSKFNGEIVIHSRGLKNIDKPAVFVFAEIDVCLVCRSAEFTVPVAELRLLEKGHAAAASKT
Ga0210383_1000006163F026083GAGGVGAITFDYAVPLEKTMAFESVYHPNLQLELSEKQEVWNTPGAFFVWMFVGGELAGESYGIPLASPTDFLDDLLVLPASEKEKAVCCYSNTILPRFQKRGYGAILKAHWLGLAVGKGYDVVYGHARPGGSQALNAKFGAVFLEDLPDWFGSGEDYKKYRLVLNPSAKG
Ga0210383_1000006189F044033GGAMSRSRAITVNAEHKGIELQIDADARLAAAAGGAARFLGESAGLTGEEVAELQKSVVAACEEAFEHLTGEHAHLTVKLERFPDRIEVSMSHEGGAEPAVGLDRIAGFATQIGSAGGLGGVDRVQYEAHNGIAVTRLTKYLGRAPHIA
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