NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10013620

Scaffold Ga0210383_10013620


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10013620 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6872
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008565Metagenome / Metatranscriptome331Y
F035384Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_100136202F008565GGAGGMKRLAITATLLLLCISFPLPSHAARHKVPRYLTKESSVDMSKMTHIFVGWVDLGADDWALWGYGNKTDWTDIIGSLNSSFSRNLVPGRTITSAKDKADENAAGNDLYIKFSDVRVDYNNYHLILSIHFIDPKTNSEIAVIPVRPYYGNDWGLKNYLKAALDEVGTKVKVEVTGQSAEKKK
Ga0210383_100136203F008565GGAMKRLAIAATLLLLCISFPASLEASHKVPRYLSKESSIDMSHMNRVFLGWVDLEPDAWALYSYTSKADWADTITSLNAGFARSVQATYLPGRTITAARDSENEITSANDLYIKFSDIQVDYENAHLILSIHFIDLKTNSEIASIPVRPYYGNASGLKNYLKAALDEVAKKLQVEVTGEAPGKK
Ga0210383_100136204F035384N/AVAQVLEYTAAAYAAAIYAAIDAAAIKELKMKKYLSLFWLVAVVLILSVGLSAKDLDTKGKAWLDAHSEAAAVNVNGNWHEKDWGAVVLLQAEGSRDVTGDGDGWAITGVVSGKQIFLLFSQKGSVAYTAELTWESDKSLNGSYAKGFMEEKKKNRPMHLIKP
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