NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10244818

Scaffold Ga0210383_10244818


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10244818 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1538
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F032938Metagenome / Metatranscriptome178Y
F045709Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_102448182F032938AGGAGMKKYLVVSYDDDQQQWFWDYVAANTEADAVAHVCERRPYVIAADAASLSQVQGIAKNLKGRSISRIIHQFNWDTATPEENKRT
Ga0210383_102448183F014894AGGAMRMSIGVPGFSIYFEHHQVKPFIKDQSSKAKDLFNERVVPAVLRGTCKVLEAVANNSADAHDYLVSKTKTKKSA
Ga0210383_102448184F045709GGAGGVNLTPSQKGSFLAGIGLWVLIWASIWKADDIAAAMRIQRWFNSSRCIRWIGQHKSTSLLGTEVINYGTHGLDPLGVSFSLGGTLVNVLVIYLLLPCLEKLLRQKGMATSTLR
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