NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10525231

Scaffold Ga0210383_10525231


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10525231 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1021
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030821Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0210383_105252312F030821AGGCGGMTAVSAFLLALITGWMVPAARLAMAAFLGPWLVALVYQTADIGLGYAVSPPQTVTQFPRVIGYVVVTAVILALGLILSALIGERRSRVVPVAGRQTAREMVNRAALAGTVVVAALICLDIADHAVLVWPESTAHHTTNPSPPLFGILSIVLCLIGIAVLGTAVLRRRAAARLGDQGTRTAGNA
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