NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000005

Scaffold Ga0210394_10000005


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000005 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)547201
Total Scaffold Genes449 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)336 (74.83%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000850Metagenome / Metatranscriptome861Y
F000867Metagenome / Metatranscriptome854Y
F001520Metagenome / Metatranscriptome679Y
F014165Metagenome / Metatranscriptome265Y
F014416Metagenome / Metatranscriptome263Y
F015366Metagenome / Metatranscriptome255Y
F053421Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000000510F001520AGGAGMNAIKFLFAAYIATWVIHGAYLASLVRRFGKLRQQLREVGKK
Ga0210394_10000005222F053421GGAGMTQYRTVHLPEELCGAAEKLLAGRFENLEALLSFLLQEIVKDDAAKFDRAEEQMIEQRLKDLGYI
Ga0210394_10000005272F000867N/AMNTCRVPHFSRVFGARSGVFLDIIALATLLLLASCSPRDFLSRRLATDLISASELFRTPQHFALQTGTVSNKDYVSPEYLVLQQHGWISATAARCSPGMAPPPCWDVFLTPAGVDTVRALVPADEADKTLFFIPVARRELVGVTGISKQGNQADVDFTWRWVPLNEVGAALYSADLRYGSTVGFREYDDGWRILAARSAPHPNPNQTLDDALKNAEPAQ
Ga0210394_10000005289F000042AGGAGMKNIKFVVKVNRGGTRAPAYVQRVDPAPIHMTTDRKLALVMGRFTAEDAIKSLQNSHCIPELESVQVSS
Ga0210394_10000005427F014416GAGMERKQKRALTEGEVAVLVIIQEGYGPQQNGVDRVCFSPADEAVLFVKLKNGMNTLFANLSNLAAQRADGTIASDEELKTKHLRLK
Ga0210394_10000005439F015366AGGAMTPDKKWRLTNAVGFLSGLLACLDALRDVRVLWPPDVVWEALRSSQRLELGGGIALIVVTLVTSALQRRTAAGR
Ga0210394_10000005440F014165AGGAMAVAKLKRPNEDRLEELADRIAAEINERAAKMTPEDRAQADAQTKKIAAQVQRRTP
Ga0210394_1000000575F000850GGAMKKPEFTDAGWLGPRDEMDLASHRFGRCSECRENICVEKAVTDTQNTRSETNELLDHTFRVHIKLKHS
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