NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000027

Scaffold Ga0210394_10000027


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000027 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)353169
Total Scaffold Genes316 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)213 (67.41%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000530Metagenome / Metatranscriptome1047Y
F000725Metagenome / Metatranscriptome918Y
F000949Metagenome / Metatranscriptome823Y
F003137Metagenome / Metatranscriptome505Y
F014538Metagenome / Metatranscriptome262Y
F016558Metagenome / Metatranscriptome246Y
F023747Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000027113F000530N/AMSEELNSTEPVVPGNRNQVSDRPFRVKLRGSVLVLVRLPNRRSLRGALHQLSTSGGVIHLEKPLDEKLEVELIFHLHKTTIRGKAQMLFPMWATQGWMQPFRFVTLSDADRESLDANLKSFLGDAAKNAAAGS
Ga0210394_10000027114F016558N/AMEVTTANATRRSTRVRVEIPVSVISLDRTKPFGDRCVVLIVSAQGCGFRSSEALQIGTPIMLSGLPGGGSVTARVVNCVPLGNDGNYFLIGASLYTHGNCWGIANPPADWKDAAQDNPAPPPATSHPAEAPQLTVNKKVWPYNLFSEGAEVHPGRK
Ga0210394_10000027178F003137AGGCGGVARKKKTKRFRAVTAVKELARERVGAPPAGQIVVEKKKKPEKHKPTLGKLMTEGE
Ga0210394_10000027198F023747AGGAGGMKFPSSVLAGTLLLTFVASVAQQSSTPVKWAEGAPNATSEVKNDTKIEGLKTDDVQIYISVAEIKETEYNRVWVQIYNHSKAAIDLDPQSAILINEKDKTVRAEVPNKAANSIQKFGEAKSQELTSAHCPNMIATQCQPTVSEAQVAKQVAAYSAQQAQWVRDNGLTQKSIAPGQDAKGYIVFKKEKKKTSYILKIPVGTQVFEFPVTADNKAPEFD
Ga0210394_10000027228F000725N/AMNKALKTLRAVQWSMLVSILLYGLVGELVGPNARAVDPALSYLFSTLAVAIVGVIFVVRRTLVLRAAESLAIHPDDNLSLNHWRTGYLATYALCEALALFGLVQRFLGCSLQQSALYYLGGFVLLFFFRPRQPMASA
Ga0210394_10000027233F000949GAGMLNVECGMKTSEGVSRTGSDVWFYLLAALCGIGAGWADVAINDMLFTALLVLSACLLLGLLRPRWPWRWVVTVGVFIPLTELAAYVVLTVKPTRAQIYGSFLAFLPGIAGAYGGSFMRGVVENLRQGK
Ga0210394_10000027276F014538AGGMKKQASDQQSHDRRYQERKRAEAARQQPVKKKTANEVSKPAPAADAPKQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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