NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000043

Scaffold Ga0210394_10000043


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000043 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)300016
Total Scaffold Genes264 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)173 (65.53%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000675Metagenome / Metatranscriptome941Y
F002181Metagenome / Metatranscriptome586Y
F012912Metagenome / Metatranscriptome276Y
F020588Metagenome / Metatranscriptome223Y
F030505Metagenome / Metatranscriptome185Y
F038576Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000043204F020588GAGGMTIDERLEALTRNRELLSLESEKHDRQLDRAAKLVTEVAEGTARLLRIVEMHEHRLDSDDRLDKLE
Ga0210394_10000043261F012912N/AMELLLNLAWLLLALPAYWLWRVSRTVPAGRKISSWQCLLALGCMLVILFPVVSATDDLCAMRTEMEESPASKRTVRQASPDKVSAWKWQSPPALAGSTNFLIVNDEDWQQMPAASLSVPAAPAIQRAGRAPPASFPG
Ga0210394_1000004338F030505N/AMPVLLFATVIASVSLGVLAAYAAVICILNAFGSRSQQHPETGRPRLVLVPTQHHASGD
Ga0210394_1000004347F038576AGGAGGMKTLRCLLGFLALLLPASLVLSCGTKSPSPGQDPLQSVTLSPPSADAQDYPNGQVPFVATGYYADPVRKVSPLSAGWGACIQGGPTQEAPTNAVTVTQGGVAQCTAGAVGTYTVWANDPPYTSVECLAITACGGGCFVAGAAQLTCP
Ga0210394_1000004350F002181AGGAMALAPKQDPELPSRLRKTNDELKDLQNSVKTGMIDVKVLMDFRTASERARQASVAVQRWLESQGKGNDPYQLMTEVMRQRVEMTTQLVKDVTRDLESLDLDFDTPGLPALNTAVRTLAERLAKLFPH
Ga0210394_1000004381F000675N/AVTSRPTSSTYRCADCGSEVGFRSRRRTLTERFILPLFLLQPVRCGECFRRDYRWIFTDVRDRLSDASKIMPKKQPAATSNRNVA
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