NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000048

Scaffold Ga0210394_10000048


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000048 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)285100
Total Scaffold Genes238 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)180 (75.63%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002273Metagenome / Metatranscriptome576Y
F021622Metagenome / Metatranscriptome218Y
F024610Metagenome / Metatranscriptome205Y
F027914Metagenome / Metatranscriptome193Y
F029511Metagenome / Metatranscriptome188Y
F069818Metagenome / Metatranscriptome123Y
F076314Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000048109F002273GGAGMGGDVIGLVAVVLTCGIPLALMYTFYRVRKLRTEERLAALARGTEIPMEPELSQYARSRRAGVLLVSGGVGFILMFAMIARVLGEPETLVASAFGILPLAVGMGYFLDAALIRRDLKAS
Ga0210394_10000048228F027914N/AMRGELSLVAASLLVLLSVELWKWQFPAMAAGEKLAWVITALRMKIPFSCSALIRR
Ga0210394_10000048229F024610AGGAMKSNTLVRSLALAAALAITVPLFAKPVAKSLAVPHPVKFGKVDVKAGDYRAMIDDNHITLLNGRKVIAESAGRWEDRSQKSPYTVIVSNEDGRVLELRFEGKAQVFILSE
Ga0210394_1000004830F076314GAGMQATPRRARPTEAFLIALFSLLAVLVLAAFQFGDNNGLNNMPFAQVQRLVSDLPKAQKMASDGNLELLAGKPVPGESRTLRGELTDANCFLTTHTHAYDHAFCAKFCAAAGSPLVFASDQGGLVYVVLPARNGVELPGRALDLIGVPGIVLRGRTLGADGVRSFAVESVQP
Ga0210394_1000004842F029511GGCGGMLYWGSGPALGLLTCMGYGIFLLGSLFLWRNREELCLWIEDEFSAFRRNLSRYESVGPFYLPRTESRLRAIPAGFLDSVSRFPHRRLSPGAFLLMLGLLLFTLDFFI
Ga0210394_1000004878F069818N/AMRSKSEQAYVLFLLLGAILLAAQLHCCVDVNSRTIDSHVCPICSAAGTAVATPSLIVEMAPAINRLEVSGVAVSVPVVVPRSIAPRGPPAA
Ga0210394_1000004894F021622AGGMPANFSPPGYRWFHFFRNAPTRVGFYTGVWLSLVFVAWIVIANRVPFLEPLARQRNAAAALLLLLIAGMPVLRFLREPADLLISGLLAWSVMTLAYRILSLKFVLLQGYYSSFHVFVLGAVTYLLFATLSWIGMIVWRAREAQGTHTSR
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