NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000108

Scaffold Ga0210394_10000108


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000108 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)204239
Total Scaffold Genes181 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)140 (77.35%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F000228Metagenome / Metatranscriptome1519Y
F001220Metagenome / Metatranscriptome744Y
F004564Metagenome / Metatranscriptome433Y
F010121Metagenome / Metatranscriptome308Y
F013792Metagenome / Metatranscriptome268Y
F064052Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000108118F004564GGAGMEPISQLSSKPSLKGTAGLVVAIGVVAVLLIALPAYRWFFLISLGIGLAVAGILFLWHRFRPIQEKDVENKKPLGLG
Ga0210394_10000108123F010121AGGALWRVSEACKTSGRWWPLGLLATSLAGIGVVVFRGCWHGKMSWPVRAQDHSYQVCLSCGIKRLFNEKDFRAYGPYNYDLTHLIAWNLGRVTPQSEPKPRRTA
Ga0210394_10000108141F013792AGGMSGHDSLTKRLCQVSPYAGRIEPIIDLMPEIMERNDQLRPLWTAWRQNATPDLAPRQYFSRREIKVLCDFMEYLYFASDAFARSARSGR
Ga0210394_1000010837F001220AGGAMSTRVLLGVVLAVYTVGWAHAQASDKIRVIEILADKDSRYKIAGEKTPEISVKAGERVLLRITARKAKSHNRDGFIHGFSLLRAKDRTKVPDWDLLLKPGTQEFAMTAPQEPGDYVVVCTVICSEDHEGMFMRFVVEP
Ga0210394_1000010856F000228AGGAGLSGSSVKPQTSRGLRMYLVPCSCGTTFAVAEDRDSKGTGWSRYLKCPKCGKRHDPKNRLLQLGYQGDGYWKVEQC
Ga0210394_1000010872F064052N/AMVVGRLFLIYAGLMAGLVGLWYFCMAAYNRRRGLLALRKVEAACSHRARVVDAHWIGASKLQAHLRFAARWFENARITIRLQPRPVPMLWLLSSWHKQRETVTFEADLDNAPGVRLDVFRHHWLSDGDRQMIKSSRNWTVTRSQPVVLTTSNLWRKELPPIVNTLMASRGHNLLKVRLRPESPHIAATMDLDALSGEEAAAGFLSVLRELAAGASRTRQ
Ga0210394_1000010874F000078AGGGGGLENLYCLRCNRELEAGRKSVAMYMFAQTVGIRPRQKSAAQRICFCPQCSVSLAMGPPPEGALNVAAWNMIRELVGSDPALNQAAWENLRGVVGLLPATGTDGVPRRASGEGYFEF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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