NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000114

Scaffold Ga0210394_10000114


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000114 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)195436
Total Scaffold Genes175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)133 (76.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000209Metagenome / Metatranscriptome1592Y
F001893Metagenome / Metatranscriptome621Y
F038767Metagenome / Metatranscriptome165Y
F048535Metagenome / Metatranscriptome148Y
F106070Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000114131F038767GGAGGMIPPKIARMPQFAVRVCGVEVSNVTVRVVVGSGQCPVKHELVFEDGLLGTMPLDDTLPIEIWRMKGPLSRQKWQTTDVRGLYAELLLSGGIDVVGAGEGEKATC
Ga0210394_10000114168F000209GGAGGMAFSQNFVRPQSAAELRLHDRLTLALVGIGVIFASLGLGEAVYRFAFLDFDGATDRLPIEMLFGLAFAWMTIKLARKIYLYRIETSARINFIRDRSYKIRDAAEAIKPLPYPGNHQAIRVIREEVDRIELALTDVTPR
Ga0210394_1000011443F001893N/AMGTIKALVGFLAIIAVFVCLFQVAPPLMANYSFQDDLKTEAMVAGANPSRTDDDVRNDILRKAREHELPIEAKQVTVQRISTPGISAVYVEADYTVPVKLPGYTFDMHFNPTSGNK
Ga0210394_1000011473F106070GGAGGLSTSAKSKQRPGFLDNLMTTGPKHEPETEEAEQTLKEARLALITPMLDVVFRSGKVRSFGYAYLSEVEFEPGDTLTLKFTSGAQVVIEGRDLARHRQQVRLHRASEIRESSESELELDGKDVSQVERIQITEGDKP
Ga0210394_1000011474F048535GGAMTQEGVKALSDSELVQVEGWVKDEQKARAERKKRETIAKIKELAQVAGVQVAIGGARGRPKNGIKRG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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