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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021420 Open in IMG/M |
| Scaffold ID | Ga0210394_10000242 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 129021 |
| Total Scaffold Genes | 112 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 94 (83.93%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001463 | Metagenome / Metatranscriptome | 690 | Y |
| F005062 | Metagenome / Metatranscriptome | 413 | Y |
| F015758 | Metagenome / Metatranscriptome | 252 | Y |
| F016424 | Metagenome / Metatranscriptome | 247 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210394_100002426 | F016424 | GAGG | VGKTVGKVPRKTVRDEKSEFGKDRRRRHHHFLVTVNYADGETFGRVYTDKEKATRFAERQRRSPIVKSARVTQVS |
| Ga0210394_100002427 | F001463 | GAG | MLFAAKKDATMIVIAKQPPLLEDLRKHAPEQMAELRLLLNAGVIGRPDTRRPGFFELDGAANVYYIFRYPTGHKVLLVAAWQKHTDPVAEMVACWSPAA |
| Ga0210394_1000024276 | F015758 | GGAG | MNDAMITDNRLAQAAKTELKGRIRRIRLEDALVELACGLCLEEVPIEMALQKIQDKALERMVPLLDTKILGNAEAVQGCLELVAEESERVAWKALQKGTEMMEEGLAILEDGGLELPEGGYLN |
| Ga0210394_1000024292 | F005062 | GAGG | MADRTPPTSLHIGARIGGALLVSCVILFTCRSVASPQAPAPSPAPTIRVQSSLVLVDVTTQDPKSGLPVRDLKREDFRVFDNRREVPIATFDAGAFGKTRPAIVWLVVICNEQGKIAGSANYAGKEALFRPPLDHLDAHDMVGVAHWCDNGETQLDLPPTVDHDSPIRVLAEVIRPIPFKGETSDSDAVGEVTFRKMIRLIIQDAYQRNPQPLPVIVFLDGDHTGQPIGELNNLVDDFLETSGIVFGIKDYLYPAVLPLIGEHGQILHYMAKHTGGQYLTAPPAGYAAALESILMQLHFRYQIGFIPPAIDGKRHELKVELTKEARAKHKGVRLRFRTEYIPVSEEPAWAR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |