NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000377

Scaffold Ga0210394_10000377


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000377 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98667
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (58.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002338Metagenome / Metatranscriptome569Y
F006775Metagenome365Y
F024882Metagenome / Metatranscriptome204Y
F101406Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000037726F002338N/AMQELKAEKPPESPSDTDPASRLMARLTEEGFTTDLTDEDWRRYGEIIYRRAEKISFAAGETVFIFTRVHDLNERILKQTSESVVNAYKARGVAGKALSVLQSTTVYHCLVAGGDQPHNDLLTGYVTRAGGATFIPVIIVPEINQVIYPDLEEKVASVRPRVEYLQYLLGERRETVNMHRPTVQAMWVSLAVVLVLLLAIAVSMFH
Ga0210394_1000037738F006775N/AMQLAKDSCACGHPLEQHDGGRGGPCNFCACATGEPPSAFEVGVIHSIHEMTTVLVRLVKEIQAKQP
Ga0210394_1000037744F024882N/AMPFLLRLPTPDSRPPYNYEMPCNHIGPVELIEMAETHLRERAVSPADGMRFRWSENPEDGMWASIVIDVERRGEQWIVTRLDRKKEPLPPDETGFRAL
Ga0210394_1000037786F101406N/AMLKVSRGFIAALGGVGMTLLAWYGSWAWPGWPASVAIDLLERFADFPDLSHLARSVVVVLLIIINVGTWAMVLRAVMLLVPRRVEA
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