NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000910

Scaffold Ga0210394_10000910


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000910 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52849
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (84.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000628Metagenome / Metatranscriptome973Y
F026686Metagenome / Metatranscriptome197Y
F061171Metagenome / Metatranscriptome132N
F077875Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000091029F026686AGGMGSVDTKRLSGEVAARHGLLIREDDPAMALVTMSEIVLEQFLSEAELRLRGLVSEAEKGQKRSQQETLVWVQEEMGRAGSALRAELQRDIDAGRLQARELVVQLSQVYARSAVRRWVALGIVSGLLLVLIGVGLGLELGRWLR
Ga0210394_1000091030F077875GGAGGMRFLLGFLFGASYSGNRAFRIAFLLILLFLAFCLYQMSKPLGHNRRATAPSAQVR
Ga0210394_1000091033F061171GAGMTCYDLAAVLLRATAVVTIVWAASLASWQVLVHSHAIFGSFTFGVGRLWLSGAGALLGCGGFLACRVLEGRSDVGRWVLYVYGFAFLVFSLVRLMEWFEVSGATGFRY
Ga0210394_1000091043F000628AGGAVPTRRNIGFDVFNVRLLIALDKLLRKKRRYQGDLSASINDALLAVNLNSVKLVTLQGRKKQTARETQVVILRRLIRRIQRIADVRGCSMNQLVNSGLLAYYSKGRRGKLDGSSRAARGSSMAAYDKMSDGERQQLMQVLGSLTGLQEGPKEGFPDGTRYEYDPDLKTTVEVTPSGERFPVVLVAGKLQRKSEKVLAHKTTR
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