NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000972

Scaffold Ga0210394_10000972


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000972 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50064
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (71.74%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047273Metagenome / Metatranscriptome150Y
F081654Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000097217F047273GGAGMLVFFGLIFFIGLTVAVFVDRGARNRQDIEVLKRIYAGFIPLPWILAATLFLNGKLDAPKNVVYYPTTVQSRFNMRGMVRGSRRLLVRSWRPGEKVERLAVDPDDYDRFHDGDAVVVGVAPGALGISWFYGIYRR
Ga0210394_1000097219F081654AGGVWSSTFPNQVKYVASHGINRAAHRASRFNERRSCVMRLVFALLIALFSYPARPQTNETSKPVEWKSVSFAIVRFNDEAPASWNIYHTSKRGVLLVKLWKRYLLVNVPERQVFDIDPRTVKPQGDGVQWSTSDMPGEPLEITEWKDRNVGPVERLRFRLGKDGHILELQIPLLPGGKPAY
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